RnoEX0070106 @ rn6
Exon Skipping
Gene
ENSRNOG00000052539 | Prpf40b
Description
pre-mRNA processing factor 40 homolog B [Source:RGD Symbol;Acc:1565411]
Coordinates
chr7:140959211-140968206:+
Coord C1 exon
chr7:140959211-140959311
Coord A exon
chr7:140967288-140967368
Coord C2 exon
chr7:140968063-140968206
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTCTCCCTCAACAGTCG
3' ss Score
10.46
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
GCGGCCCGGGCTCGGGCCGGGGAGGCGGGAGGGCCGCCGGGGTACCCGGGACCCTGAGGGAGGGCGAGGGGACCGAGGGGTGAGGAAAAGAAGCCCAGTAG
Seq A exon
TCGGTTCCCGATTCTGGTCCCCGGCCCCCAGCAGCGCCTGCCCCCTTCCCACCGGGGCCCCCCATGATGCCACCACCCTTC
Seq C2 exon
ATGCCCCCTCCAGGGCTCCCACCTCCTTTTCCTCCGATGGGGCTCCCCCCTATGAGTCAGAGACCTCCAGCCATCCCCCCCATGCCACCTGGCATATTGCCCCCAATGCTTCCACCAATGGGGGCACCGCCTCCACTTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052539-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGGGTGAGGAAAAGAAGC
R:
CTGTGTAAGTGGAGGCGGTG
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]