HsaEX0050374 @ hg38
Exon Skipping
Gene
ENSG00000110844 | PRPF40B
Description
pre-mRNA processing factor 40 homolog B [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr12:49622637-49631544:+
Coord C1 exon
chr12:49622637-49622734
Coord A exon
chr12:49630545-49630625
Coord C2 exon
chr12:49631401-49631544
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTCTCCCTCAACAGTCG
3' ss Score
10.46
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
GTGTCACCTCTAACTCTTCGTGTCAGGAGTTTTTCTACCTCTCCGGAGTTCTTTGGCTCTCAGGAACCTAGCACGGCATCACGCGAGTCCCGGCTCAG
Seq A exon
TCGGTTCCCGATTCTGGTCCCCGGCCCCCAGCAGCGCCTGCCCCCTTCCCACCGGGGCCCCCCATGATGCCACCACCCTTC
Seq C2 exon
ATGCCCCCTCCAGGGATCCCCCCACCCTTTCCTCCGATGGGGCTACCCCCCATGAGTCAGAGACCACCAGCTATCCCCCCCATGCCACCTGGCATCCTGCCCCCAATGCTTCCACCAATGGGGGCGCCACCACCACTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110844_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.977 C2=0.993
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGAGTTCTTTGGCTCTCA
R:
CATTGGTGGAAGCATTGGGGG
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development