BtaEX0028621 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016589 | PRPF40B
Description
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr5:30375306-30379879:-
Coord C1 exon
chr5:30379788-30379879
Coord A exon
chr5:30375639-30375755
Coord C2 exon
chr5:30375306-30375443
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATGCGCTGCTGTGCCCACAGGAC
3' ss Score
9.43
5' ss Seq
AGTGTGAGG
5' ss Score
2.87
Exon sequences
Seq C1 exon
GCTCCACCCCTCTGGACTTGTTCAAGTTCTATGTGGAAGAGTTGAAGGCCCGATTCCATGATGAGAAGAAGATCATAAAGGACATCCTTAAG
Seq A exon
GACCGGGGCTTCTGCGTGGAGGTGAACACAGCCTTCGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGATGCAGGCAACATCAAGCTGACTTTCAATAGT
Seq C2 exon
CTGCTGGAGAAAGCAGAGGCGCGCGAGAGAGAGCGGGAGAAGGAGGAGGCCCGGCGGCTGCGGCGCAGGGAAGCTGCCTTCCGAAGCATGCTGAGGCAGGCTGTGCCTGCTCTGGAGCTGGGCACGGCCTGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016589_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.217
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(17.9=32.3)
A:
NO
C2:
PF0184614=FF=PU(46.2=52.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCCCTCTGGACTTGTT
R:
CCGTGCCCAGCTCCAGAG
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development