GgaEX1046338 @ galGal3
Exon Skipping
Gene
ENSGALG00000012526 | PRPF40A
Description
NA
Coordinates
chr7:37183011-37183777:-
Coord C1 exon
chr7:37183686-37183777
Coord A exon
chr7:37183397-37183513
Coord C2 exon
chr7:37183011-37183148
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGCTTATTTACAGGAT
3' ss Score
8.85
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GATCAACAGCACTTGATCTCTTCAAGTTCTATGTTGAAGACTTAAAAGCACGTTACCATGATGAGAAGAAGATCATAAAAGATATCCTAAAG
Seq A exon
GATAAAGGATTTGTGGTTGAAGTGAATACTTCTTTTGAAGACTTTGTCACAGTCATCAGTTCAACTAAGCGAGCCACCACTTTAGATGCAGGAAATATCAAGCTGGCATTCAACAGT
Seq C2 exon
CTGCTGGAAAAGGCAGAAGCCCGTGAAAGAGAAAGGGAAAAAGAAGAAGCTCGCAAAATGAAGCGGAAAGAGTCTGCCTTCAAGAGTATGCTGAAACAAGCTACTCCTCCCATCGAGCTGGATGCTGTCTGGGAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526-'24-32,'24-31,25-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.543
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(17.9=32.3)
A:
NO
C2:
PF0184614=FF=PU(46.2=52.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAGCACTTGATCTCTTCA
R:
TCTTCCCAGACAGCATCCAGC
Band lengths:
227-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]