GgaEX1046338 @ galGal4
Exon Skipping
Gene
ENSGALG00000012526 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr7:35053029-35054698:-
Coord C1 exon
chr7:35054593-35054698
Coord A exon
chr7:35054043-35054159
Coord C2 exon
chr7:35053029-35053124
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGCTTATTTACAGGAT
3' ss Score
8.85
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ATATTTTTAGATGAACTGCACGAGCACGGACAGTTACATTCGATGTCCTCTTGGATGGAGTTGTACCCAACCATAAGCTCTGACATCAGATTCACTAATATGCTTG
Seq A exon
GATAAAGGATTTGTGGTTGAAGTGAATACTTCTTTTGAAGACTTTGTCACAGTCATCAGTTCAACTAAGCGAGCCACCACTTTAGATGCAGGAAATATCAAGCTGGCATTCAACAGT
Seq C2 exon
ATCAGAGATAGATTTGTGAAGGAACCAGCATTTGAAGACATCACTCTGGAGTCTGAAAGGAAAAGAATATTTAAAGATTTCATGCATGTACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526_MULTIEX3-2/6=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.156
Domain overlap (PFAM):
C1:
PF0184614=FF=FE(67.9=100)
A:
NO
C2:
PF0184614=FF=PD(50.0=81.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTTTTAGATGAACTGCACGAGC
R:
AAATATTCTTTTCCTTTCAGACTCCA
Band lengths:
178-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]