DreEX6034937 @ danRer10
Exon Skipping
Gene
ENSDARG00000058467 | prpf40a
Description
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-274]
Coordinates
chr9:4740833-4743995:+
Coord C1 exon
chr9:4740833-4740924
Coord A exon
chr9:4741010-4741126
Coord C2 exon
chr9:4743858-4743995
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTTGTGTGTTTTGTTCCAGGAT
3' ss Score
10.48
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
Exon sequences
Seq C1 exon
GCTCCACGCCTCTGGACTTATTTAAGTTTTATGTGGAGGATCTGAAAGCTCGTTACCATGATGAGAAGAGAATCATTAAAGACATCCTGAAG
Seq A exon
GATAAAGGTTTCCTGGTGGAGATCAACACAGGCTTTGAGGACTTTGGCTCAGTGATCAGCTCTGATAAACGCGCCACCACGCTTGATGCGGGAAACATCAAACTGGCCTTCAACAGT
Seq C2 exon
TTGCTCGAGAAGGCTGAAGCACGAGAGCGGGAGAGAGAAAAAGAGGAGGCCAGAAAGATGAAGAGGAAGGAAGCGGCGTTTAAGAGCATGTTAAAACAGGCCACACCCCCTCTAGAGCCCGAGGCCACGTGGGAGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058467-'20-22,'20-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.870
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(17.9=32.3)
A:
NO
C2:
PF0184614=FF=PU(46.2=52.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCACGCCTCTGGACTTAT
R:
GGCTCTAGAGGGGGTGTGG
Band lengths:
211-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]