RnoEX0070097 @ rn6
Exon Skipping
Gene
ENSRNOG00000004864 | Prpf40a
Description
pre-mRNA processing factor 40 homolog A [Source:RGD Symbol;Acc:1311401]
Coordinates
chr3:38689297-38689986:-
Coord C1 exon
chr3:38689895-38689986
Coord A exon
chr3:38689693-38689809
Coord C2 exon
chr3:38689297-38689434
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATAAGATTTCTGGCTTTTAGGAT
3' ss Score
7.53
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GATCAACTGCACTTGATCTTTTCAAGTTTTATGTTGAAGATCTTAAAGCACGATATCATGATGAAAAAAAGATAATAAAAGACATTCTGAAG
Seq A exon
GATAAAGGATTTGTAGTTGAAGTAAACACTACTTTTGAAGATTTTGTGGCAATAATCAGTTCAACCAAAAGATCAACCACTTTGGATGCTGGAAATATCAAGTTGGCTTTCAATAGT
Seq C2 exon
TTACTAGAAAAGGCAGAAGCCCGTGAACGTGAGAGAGAAAAGGAAGAAGCTCGGAAAATGAAACGAAAAGAGTCTGCCTTTAAGAGTATGTTGAAACAGGCCACTCCTCCAATAGAACTGGATGCTGTCTGGGAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004864-'28-30,'28-28,29-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.449
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(17.9=32.3)
A:
NO
C2:
PF0184614=FF=PU(46.2=52.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTGCACTTGATCTTTTCAA
R:
TCTTCCCAGACAGCATCCAGT
Band lengths:
227-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]