RnoEX0070110 @ rn6
Exon Skipping
Gene
ENSRNOG00000052539 | Prpf40b
Description
pre-mRNA processing factor 40 homolog B [Source:RGD Symbol;Acc:1565411]
Coordinates
chr7:140973972-140979482:+
Coord C1 exon
chr7:140973972-140974063
Coord A exon
chr7:140979081-140979197
Coord C2 exon
chr7:140979345-140979482
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACACACTGCTGTGCCCACAGGAC
3' ss Score
8.83
5' ss Seq
AGTGTGAGG
5' ss Score
2.87
Exon sequences
Seq C1 exon
GCTCGACTCCTCTGGACTTGTTCAAGTTCTATGTGGAGGAGTTGAAGGCTCGGTTCCACGATGAGAAGAAAATCATAAAGGATATTCTTAAG
Seq A exon
GACCGGGGCTTCTGTGTGGAGGTGAACACAGCCTTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAACAGT
Seq C2 exon
CTGCTGGAAAAAGCAGAGGCACGGGAGAGGGAACGGGAAAAGGAGGAGGCCCGAAGGATGCGGCGCAGAGAAGCTGCCTTTCGAAGCATGCTGAGGCAGGCCGTGCCTGCTCTGGAGCTGGGCACTGCCTGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052539-'21-29,'21-28,25-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.304
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(17.9=32.3)
A:
NO
C2:
PF0184614=FF=PU(46.2=52.2)
Main Skipping Isoform:
ENSRNOT00000091306fB11422
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGACTCCTCTGGACTTGT
R:
GCAGTGCCCAGCTCCAGAG
Band lengths:
220-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]