MmuEX0037346 @ mm9
Exon Skipping
Gene
ENSMUSG00000023007 | Prpf40b
Description
PRP40 pre-mRNA processing factor 40 homolog B (yeast) [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99140375-99145411:+
Coord C1 exon
chr15:99140375-99140466
Coord A exon
chr15:99145009-99145125
Coord C2 exon
chr15:99145274-99145411
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACACACTGCTGTGCCCACAGGAT
3' ss Score
8.63
5' ss Seq
AGTGTGAGG
5' ss Score
2.87
Exon sequences
Seq C1 exon
GCTCTACTCCTTTGGACTTGTTCAAGTTCTATGTGGAGGAGTTGAAGGCTCGATTCCACGATGAGAAGAAGATCATAAAGGATATCCTTAAG
Seq A exon
GATCGGGGCTTCTGTGTGGAGGTGAACACAGCATTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCTGCGCTGGACGCAGGCAACATCAAGCTGACCTTCAATAGT
Seq C2 exon
CTGCTGGAAAAAGCAGAGGCACGGGAGAGGGAACGGGAAAAGGAGGAGGCCCGAAGGATGCGGCGCAGAGAAGCTGCCTTTCGAAGCATGCTGAGGCAGGCCGTGCCTGCTCTGGAGCTGGGCACTGCCTGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.306
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(17.9=32.3)
A:
NO
C2:
PF0184614=FF=PU(46.2=52.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTACTCCTTTGGACTTGTTCA
R:
GCAGTGCCCAGCTCCAGAG
Band lengths:
220-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: