MmuEX0019252 @ mm9
Exon Skipping
Gene
ENSMUSG00000075324 | Fign
Description
fidgetin [Source:MGI Symbol;Acc:MGI:1890647]
Coordinates
chr2:63809564-63936069:-
Coord C1 exon
chr2:63935899-63936069
Coord A exon
chr2:63934952-63935121
Coord C2 exon
chr2:63809564-63818956
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCTTAATTATATGCATGTAGGTT
3' ss Score
4.76
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTTTTGGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCCTTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCGATGCTACGCTAACCTATCGGGAGCTCGCTCTGCGCGTCCAG
Seq A exon
GTTAAATGAATACCTGACGAAAGGGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAAAAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTACCAGCAAGAAATGATCAGTAGCACCAGTGTTTATG
Seq C2 exon
GCTTGAAGATGCAGTGGACGCCGGAGCATGCCCAGTGGCCAGAACAGCACTTTGACATCACCTCGACCACTCGGTCTCCCGCCCACAAAGTTGAAGCCTATAGAGGTCATTTACAGCGCACCTACCAGTATGCCTGGGCGAATGATGACATATCTGCTCTGACTGCGTCCAACCTTCTGAAAAAATATGCAGAGAAGTATTCTGGCATTTTGGAAGGTCCCGTAGACCGACCTGTACTCAGCAATTATTCAGACACACCATCAGGACTCGTGAATGGTCGGAAAAATGATAGCGAACCCTGGCAGCCTTCCTTGAATTCAGAAGCCGTTTATCCTATGAACTGTGTCCCGGATGTCATCACTGCCAGCAAAGCTGGTGTCAGCTCAGCCCTCCCTCCAGTAGACGTCTCGGCAAGTATAGGGAGCTCCCCTGGGGTGGCCAGCAACCTGACAGAGCCAAGTTACTCAAGTAGTACCTGTGGAAGCCACACAGTACCTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075324-'0-5,'0-0,1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.440
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0000424=AAA=WD(100=17.4),PF093365=Vps4_C=WD(100=6.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAACATGGCAGAGGCTG
R:
TAGGCTTCAACTTTGTGGGCG
Band lengths:
257-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types