HsaEX0025800 @ hg19
Exon Skipping
Gene
ENSG00000182263 | FIGN
Description
fidgetin [Source:HGNC Symbol;Acc:13285]
Coordinates
chr2:164459121-164592522:-
Coord C1 exon
chr2:164592348-164592522
Coord A exon
chr2:164591413-164591582
Coord C2 exon
chr2:164459121-164468316
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCTTAATTATATGCATGTAGGTT
3' ss Score
4.76
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
AGCTGTTTTGGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCCTTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCGATGCTACGCTAACCTATCGGGTTCTCTCTCCGCGCGTTCAG
Seq A exon
GTTAAATGAATACCTGACGAAAGGGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAAAAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTGCCAGCAAGAAATGATCAGTAGCACCAGTGTTTATG
Seq C2 exon
GCTTGAAGATGCAGTGGACGCCAGAGCATGCCCAGTGGCCAGAACAGCACTTTGACATCACCTCAACCACTCGGTCTCCTGCCCACAAAGTTGAAGCCTACAGAGGTCATCTGCAGCGCACCTATCAGTACGCCTGGGCGAATGATGACATATCTGCTCTGACTGCATCCAACCTACTAAAAAAATATGCAGAGAAGTATTCCGGCATTTTGGAAGGTCCTGTGGACCGACCCGTACTCAGCAACTATTCGGACACACCATCAGGACTAGTGAACGGTCGGAAAAATGAAAGTGAACCCTGGCAGCCTTCCTTGAATTCAGAAGCTGTTTATCCCATGAACTGTGTTCCGGATGTTATCACTGCCAGCAAAGCTGGAGTCAGTTCAGCCCTCCCTCCAGCAGATGTCTCTGCGAGTATAGGAAGCTCTCCTGGGGTAGCCAGCAACCTGACAGAACCTAGTTATTCAAGTAGTACCTGTGGAAGCCACACTGTACCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182263-'0-3,'0-0,1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.450
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0000424=AAA=WD(100=17.4),PF093365=Vps4_C=WD(100=6.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAACATGGCAGAGGCTG
R:
GCTTCAACTTTGTGGGCAGGA
Band lengths:
254-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)