HsaEX0025801 @ hg19
Exon Skipping
Gene
ENSG00000182263 | FIGN
Description
fidgetin [Source:HGNC Symbol;Acc:13285]
Coordinates
chr2:164459121-164591582:-
Coord C1 exon
chr2:164591413-164591582
Coord A exon
chr2:164468839-164469094
Coord C2 exon
chr2:164459121-164468316
Length
256 bp
Sequences
Splice sites
3' ss Seq
ATGCTTGTTTTTTTTTTCAGAGA
3' ss Score
9.78
5' ss Seq
GAGGTATCC
5' ss Score
7.59
Exon sequences
Seq C1 exon
GTTAAATGAATACCTGACGAAAGGGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAAAAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTGCCAGCAAGAAATGATCAGTAGCACCAGTGTTTATG
Seq A exon
AGACTCAACAACAGAACTGAGAGGCAGAAAGGAGCCAGTTGTAATTCATACCGAGTTGTAGGCTTTGTGCGATGAAAGCGATGGAGCGCTGCCTGGGAGATTGCTTTGCTGCACTCCACGAAGCAGATTTGAAACTGTCGTGGACCACTTTAGATGAGAGTTGGATTATGGAATGACCTGCTATGTCTGTGTCATATTGTTCTGCGCAGGGAGCATTATACTGTGCTAACTAGGTGTTCAGTACCAAATAAGAGAG
Seq C2 exon
GCTTGAAGATGCAGTGGACGCCAGAGCATGCCCAGTGGCCAGAACAGCACTTTGACATCACCTCAACCACTCGGTCTCCTGCCCACAAAGTTGAAGCCTACAGAGGTCATCTGCAGCGCACCTATCAGTACGCCTGGGCGAATGATGACATATCTGCTCTGACTGCATCCAACCTACTAAAAAAATATGCAGAGAAGTATTCCGGCATTTTGGAAGGTCCTGTGGACCGACCCGTACTCAGCAACTATTCGGACACACCATCAGGACTAGTGAACGGTCGGAAAAATGAAAGTGAACCCTGGCAGCCTTCCTTGAATTCAGAAGCTGTTTATCCCATGAACTGTGTTCCGGATGTTATCACTGCCAGCAAAGCTGGAGTCAGTTCAGCCCTCCCTCCAGCAGATGTCTCTGCGAGTATAGGAAGCTCTCCTGGGGTAGCCAGCAACCTGACAGAACCTAGTTATTCAAGTAGTACCTGTGGAAGCCACACTGTACCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182263-'1-3,'1-2,3-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=1.000 C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000424=AAA=WD(100=17.4),PF093365=Vps4_C=WD(100=6.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATACCTGACGAAAGGGCCC
R:
GTACTGATAGGTGCGCTGCAG
Band lengths:
294-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)