HsaEX0025800 @ hg38
Exon Skipping
Gene
ENSG00000182263 | FIGN
Description
fidgetin, microtubule severing factor [Source:HGNC Symbol;Acc:HGNC:13285]
Coordinates
chr2:163602611-163736007:-
Coord C1 exon
chr2:163735838-163736007
Coord A exon
chr2:163734903-163735072
Coord C2 exon
chr2:163602611-163611806
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCTTAATTATATGCATGTAGGTT
3' ss Score
4.76
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
TTTTGGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCCTTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCGATGCTACGCTAACCTATCGGGTTCTCTCTCCGCGCGTTCAG
Seq A exon
GTTAAATGAATACCTGACGAAAGGGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAAAAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTGCCAGCAAGAAATGATCAGTAGCACCAGTGTTTATG
Seq C2 exon
GCTTGAAGATGCAGTGGACGCCAGAGCATGCCCAGTGGCCAGAACAGCACTTTGACATCACCTCAACCACTCGGTCTCCTGCCCACAAAGTTGAAGCCTACAGAGGTCATCTGCAGCGCACCTATCAGTACGCCTGGGCGAATGATGACATATCTGCTCTGACTGCATCCAACCTACTAAAAAAATATGCAGAGAAGTATTCCGGCATTTTGGAAGGTCCTGTGGACCGACCCGTACTCAGCAACTATTCGGACACACCATCAGGACTAGTGAACGGTCGGAAAAATGAAAGTGAACCCTGGCAGCCTTCCTTGAATTCAGAAGCTGTTTATCCCATGAACTGTGTTCCGGATGTTATCACTGCCAGCAAAGCTGGAGTCAGTTCAGCCCTCCCTCCAGCAGATGTCTCTGCGAGTATAGGAAGCTCTCCTGGGGTAGCCAGCAACCTGACAGAACCTAGTTATTCAAGTAGTACCTGTGGAAGCCACACTGTACCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182263_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.450
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0000424=AAA=WD(100=17.4),PF093365=Vps4_C=WD(100=6.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAACATGGCAGAGGCTG
R:
GCTTCAACTTTGTGGGCAGGA
Band lengths:
254-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development