HsaINT0064238 @ hg38
Intron Retention
Gene
ENSG00000182263 | FIGN
Description
fidgetin, microtubule severing factor [Source:HGNC Symbol;Acc:HGNC:13285]
Coordinates
chr2:163734903-163736007:-
Coord C1 exon
chr2:163735838-163736007
Coord A exon
chr2:163735073-163735837
Coord C2 exon
chr2:163734903-163735072
Length
765 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCTTAATTATATGCATGTAGGTT
3' ss Score
4.76
Exon sequences
Seq C1 exon
TTTTGGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCCTTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCGATGCTACGCTAACCTATCGGGTTCTCTCTCCGCGCGTTCAG
Seq A exon
GTAAGAGGAGCTTCGTAGTTTTCTACCATCTGTTTAAATTTGTTTTTGTTTTATTTTTAAAGAATATAAATACATCCAAGACCTGTAATTAAAAGAGATCTTCAGTTGTGCCGTAAACATTAAATTCAATTTCCACTCGTTTCTATTCTGTACGCCAACCTGCTGTCTAATTTCTCTGTTCAAAGTAGCCCTGAAACATTATAATGCATATTTTTGCTGCTTAATCATTGTAACAATAGTATGGGATTAAGAGTTCGCGATTGCAAGAATCTCGCTTTTCGCTATATTGGGCTTACTTATTACTATCTTTTTACTTCAAAAATAAAAAAATAAGAAAGCGGAGCCATAGGGTGGGGCTAGACTTTCTTCGGGAACTAACTTCTAAGTAAATAAGAAGTGTAAATAAGAATCTTGCACACACACAAAAAGTTGAGGTTAAATTACAATCTCGTGGCTGGGGGAACGAGAAAATGTCAGAAGATCGGTTGCAGAAAAATGTAAGCACATCATCTAGGAGGGGGTACAGCGTGGTGGGCGTATTGTTGGCAAGGAACGGGAGAGAAAGATGTATAATTTAATGGTATATACAATCCACTGATCCTATTACCGTCCTCCCCGGAGCTCTTGTTAGTTTCAATGGGAGTGAGTGAAATTGACATGGACTTGCATTCCTGGTCATGTGCTTTTTTTCCTTTCTTTCTTCTCCTGTGATCTGAGATCCCCTTTTTGTTGATGTTGCTTTCCCCCTTAATTATATGCATGTAG
Seq C2 exon
GTTAAATGAATACCTGACGAAAGGGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAAAAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTGCCAGCAAGAAATGATCAGTAGCACCAGTGTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182263:ENST00000333129:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTTGAAATTCCAACATGGC
R:
AAACACTGGTGCTACTGATCA
Band lengths:
334-1099
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development