MmuINT0064557 @ mm9
Intron Retention
Gene
ENSMUSG00000075324 | Fign
Description
fidgetin [Source:MGI Symbol;Acc:MGI:1890647]
Coordinates
chr2:63934952-63936064:-
Coord C1 exon
chr2:63935899-63936064
Coord A exon
chr2:63935122-63935898
Coord C2 exon
chr2:63934952-63935121
Length
777 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCTTAATTATATGCATGTAGGTT
3' ss Score
4.76
Exon sequences
Seq C1 exon
GGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCCTTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCGATGCTACGCTAACCTATCGGGAGCTCGCTCTGCGCGTCCAG
Seq A exon
GTAAGGAGAGCTTCGTAGTTTTTTACCATCTGTTTAAATTTTTTGTTTTTGTTTTATTTTTAAAGAATATAGATAGATCCAAGACCTGTAGTGAGAAGAGGTCTCAGAGTTGTGCCGTAAACAGTAAATTTAATTTGCATTCGTTTCTATTTTGTACGCCAACCTGCTGTCTAATTTCTCTGTACAAAGTAGCCCTGAAACATTATGATGCATATTTCTGCAGCTTAATCGTTATAACAATAGTATGGGATTAAGAGTTCGTGACTGCAAGAATCTCGCTTTTCGCGATATTGGGCTTACTCACTACTATCTTTTTACCTCAAAAAATAAAAAAAATAAAATAAGAAAGCGGAGCCATAGGGTGGGGCTAGACTTTCTTCGGGAACTAACTTCTAAGTAAATAAGAAGTGTAAATAAGAATCTTGCACACACACAAAAAGTTGAGGTTAAATTACAATCTCGTGGCTGGGGGATCGAGAAAAATGTCAGAGGATCGGTTGCAGAAAACTGTAAGCACATCATGCGGGAGGGGGTACAGCGTGGTGGGCGTATTGTTGGCAAGGAACGGGAGAGAAAGATGTATAATTTAATGGTATATACAATCCACTGATCCTATTACCGTCCTCCCCGGAGCTCTTGTTAGTTTCAATGGGAGTGAGTGAAATTGACATGGACTTGTATTCCCGGTCATGTGCTTTTTTTCCTTTCTTTCTTCTCCTGTGATCTGAGATCCCCTTTTTGTTGATGTTGCTTTCCCCCTTAATTATATGCATGTAG
Seq C2 exon
GTTAAATGAATACCTGACGAAAGGGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAAAAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTACCAGCAAGAAATGATCAGTAGCACCAGTGTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075324-Fign:NM_021716:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTGAAATTCCAACATGGCA
R:
TAAACACTGGTGCTACTGATCA
Band lengths:
334-1111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: