HsaINT0064238 @ hg19
Intron Retention
Gene
ENSG00000182263 | FIGN
Description
fidgetin [Source:HGNC Symbol;Acc:13285]
Coordinates
chr2:164591413-164592513:-
Coord C1 exon
chr2:164592348-164592513
Coord A exon
chr2:164591583-164592347
Coord C2 exon
chr2:164591413-164591582
Length
765 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCTTAATTATATGCATGTAGGTT
3' ss Score
4.76
Exon sequences
Seq C1 exon
GGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCCTTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCGATGCTACGCTAACCTATCGGGTTCTCTCTCCGCGCGTTCAG
Seq A exon
GTAAGAGGAGCTTCGTAGTTTTCTACCATCTGTTTAAATTTGTTTTTGTTTTATTTTTAAAGAATATAAATACATCCAAGACCTGTAATTAAAAGAGATCTTCAGTTGTGCCGTAAACATTAAATTCAATTTCCACTCGTTTCTATTCTGTACGCCAACCTGCTGTCTAATTTCTCTGTTCAAAGTAGCCCTGAAACATTATAATGCATATTTTTGCTGCTTAATCATTGTAACAATAGTATGGGATTAAGAGTTCGCGATTGCAAGAATCTCGCTTTTCGCTATATTGGGCTTACTTATTACTATCTTTTTACTTCAAAAATAAAAAAATAAGAAAGCGGAGCCATAGGGTGGGGCTAGACTTTCTTCGGGAACTAACTTCTAAGTAAATAAGAAGTGTAAATAAGAATCTTGCACACACACAAAAAGTTGAGGTTAAATTACAATCTCGTGGCTGGGGGAACGAGAAAATGTCAGAAGATCGGTTGCAGAAAAATGTAAGCACATCATCTAGGAGGGGGTACAGCGTGGTGGGCGTATTGTTGGCAAGGAACGGGAGAGAAAGATGTATAATTTAATGGTATATACAATCCACTGATCCTATTACCGTCCTCCCCGGAGCTCTTGTTAGTTTCAATGGGAGTGAGTGAAATTGACATGGACTTGCATTCCTGGTCATGTGCTTTTTTTCCTTTCTTTCTTCTCCTGTGATCTGAGATCCCCTTTTTGTTGATGTTGCTTTCCCCCTTAATTATATGCATGTAG
Seq C2 exon
GTTAAATGAATACCTGACGAAAGGGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAAAAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTGCCAGCAAGAAATGATCAGTAGCACCAGTGTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182263-FIGN:NM_018086:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.333
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTGAAATTCCAACATGGCA
R:
TAAACACTGGTGCTACTGATCA
Band lengths:
334-1099
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)