RnoINT0061115 @ rn6
Intron Retention
Gene
ENSRNOG00000004679 | Fign
Description
fidgetin, microtubule severing factor [Source:RGD Symbol;Acc:1308174]
Coordinates
chr3:50119281-50120392:-
Coord C1 exon
chr3:50120224-50120392
Coord A exon
chr3:50119451-50120223
Coord C2 exon
chr3:50119281-50119450
Length
773 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCTTAATTATATGCATGTAGGTT
3' ss Score
4.76
Exon sequences
Seq C1 exon
TTTGGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCCTTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCGATGCTACGCTAACCTATCGGGAGCTCGCTCTGCGCGTCCAG
Seq A exon
GTAAGGAGAGCTTCGTAGTTTTTTACCATCTGTTTAAATTTTTTTGTTTTTGTTTTATTTTTAAAGAATATAGATAAATCCAAGACCTGTAGTGAGAAGAGGTCTCTGAGTTGTGCCGTAAACAGTAAATTTAATTTGCATTCATTTCTATTCTGTACGCCAACCTGCTGTCTAATTTCTCCGTACAAAGTAGCCCTGAAACATTATGATGCATATTTCTGCAGCTTAATCATTGTAACAATAGTAAGGGATTAAGAGTTCGTGACTGCAAGAATCTCGCTTTTCGCGATGTTGGGCTTACTCACTACTATCTTTTTACCTCAAAAAAATAAAAAATAAGAAAGCGGAGCCATAGGGTGGGGCTAGACTTTCTTCGGGAACTAACTTCTAAGTAAATAAGAAGTGTAAATAAGAATCTTGCACACACACAAAAAGTTGAGGTTAAATTACAATCTCGTGGCTGGGGGATCGAGAAAAATGTCAGAGGATCGGTTGCAGAAAACTGTAAGCACATCATGCGGGAGGGGGTACAGCGTGGTGGGCGTATTGTTGGCAAGGAACGGGAGAGAAAGATGTATAATTTAATGGTATATACAATCCACTGATCCTATTACCGTCCTCCCCGGAGCTCTTGTTAGTTTCAATGGGAGTGAGTGAAATTGACATGGACTTGCATTCCTGGTCATGTGCTTTTTTTTCCTTTCTTTCTTCTCCTGTGATCTGAGATCCCCTTTTTGTTGATGTTGCTTTCCCCCTTAATTATATGCATGTAG
Seq C2 exon
GTTAAATGAGTACCTGACGAAAGGGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAAAAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTACCAGCAAGAAATGATCAGTAGCACCAGTGTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004679:ENSRNOT00000006175:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTTGAAATTCCAACATGGC
R:
AAACACTGGTGCTACTGATCA
Band lengths:
334-1107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]