RnoEX0036050 @ rn6
Exon Skipping
Gene
ENSRNOG00000004679 | Fign
Description
fidgetin, microtubule severing factor [Source:RGD Symbol;Acc:1308174]
Coordinates
chr3:49992397-50120392:-
Coord C1 exon
chr3:50120224-50120392
Coord A exon
chr3:50119281-50119450
Coord C2 exon
chr3:49992397-49995437
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCTTAATTATATGCATGTAGGTT
3' ss Score
4.76
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
TTTGGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCCTTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCGATGCTACGCTAACCTATCGGGAGCTCGCTCTGCGCGTCCAG
Seq A exon
GTTAAATGAGTACCTGACGAAAGGGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAAAAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTACCAGCAAGAAATGATCAGTAGCACCAGTGTTTATG
Seq C2 exon
GCTTGAAGATGCAGTGGACGCCGGAGCATGCCCAGTGGCCAGAACAGCACTTTGATATCACCTCGACTACTCGGTCTCCCGCCCACAAAGTTGAAGCCTATAGAGGTCATTTGCAACGCACCTACCAGTATGCCTGGGCGAATGATGACATATCTGCTCTGACTGCATCCAACCTTCTGAAAAAATATGCAGAGAAATATTCTGGCATTTTGGAAGGTCCCGTAGACCGACCTGTACTCAGCAATTATTCAGACACACCGTCGGGACTAGTGAATGGTCGGAAAAATGATAGCGAACCCTGGCAGTCTTCCTTGAATTCAGAAGCCGTTTATCCTATGAACTGTGTTCCGGATGTCATCACCGCCAGCAAAGCTGGTGTCAGTTCAGCCCTCCCTCCAGTAGATGTCTCGGCAAGTATAGGAAGCTCCCCTGGGGTGGCCAGCAACCTGACAGAACCAAGTTACTCAAGTAGTACCTGTGGAAGCCACACAGTACCTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004679-'0-5,'0-0,2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.437
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0000424=AAA=WD(100=17.4),PF093365=Vps4_C=WD(100=6.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAACATGGCAGAGGCTG
R:
TAGGCTTCAACTTTGTGGGCG
Band lengths:
257-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]