MmuEX0011462 @ mm9
Exon Skipping
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32219325-32223052:+
Coord C1 exon
chr2:32219325-32219499
Coord A exon
chr2:32219739-32219854
Coord C2 exon
chr2:32222823-32223052
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACCCTACTCCCATCACACAGGGG
3' ss Score
7
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CCACCATGTTCAACCCGCAACTCCAGCAGCAGCAACAGTTGCAGCAGCAGCAGCAACAGTTGCAGCAGCAGCTCCAGCAGCAGCAGCTCCAGCAGCAGCAACAGCAGATACTGCAGCTCCAACAGCTGCTGCAACAGTCCCCACCACAGGCCTCCTTGTCCATTCCTGTCAGCCG
Seq A exon
GGGCCTCCCCCAGCAGTCATCCCCGCAACAGCTTCTGAGTCTCCAGGGCCTCCACTCGACCTCCCTGCTCAATGGCCCCATGCTGCAAAGAGCTTTGCTCCTACAGCAGTTGCAAG
Seq C2 exon
GTAACCTCCGTGCTTTCAATGTGACAGCCCCAAGCCTAGCAGCTCCCAGCCTTACACCACCCCAGATGGTCACCCCAAATCTGCAGCAGTTCTTTCCCCAGGCTACTCGACAGTCTCTGCTGGGGCCTCCTCCTGTTGGGGTCCCAATAAACCCTTCTCAGCTCAACCACTCAGGGAGGAACACCCAGAAACAGGCCAGAACCCCCTCTTCCACCACCCCCAATCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.261 C2=0.975
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCAGCAACAGCAGATA
R:
AGTGGTTGAGCTGAGAAGGGT
Band lengths:
257-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: