HsaEX0015443 @ hg19
Exon Skipping
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130947826-130953141:-
Coord C1 exon
chr9:130952967-130953141
Coord A exon
chr9:130952608-130952723
Coord C2 exon
chr9:130947826-130948055
Length
116 bp
Sequences
Splice sites
3' ss Seq
CACCCCCTCCCAACACACAGGGG
3' ss Score
6.24
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CCACCATGTTCAGCCAGCAGCAGCAGCAGCAGCTCCAGCAACAGCAGCAGCAGCTCCAGCAGTTACAGCAGCAGCAGCTCCAGCAGCAGCAATTGCAGCAGCAGCAGTTACTGCAGCTCCAGCAGCTGCTCCAGCAGTCCCCACCACAGGCCCCGTTGCCCATGGCTGTCAGCCG
Seq A exon
GGGGCTCCCCCCGCAGCAGCCACAGCAGCCGCTTCTGAATCTCCAGGGCACCAACTCAGCCTCCCTCCTCAACGGCTCCATGCTGCAGAGAGCTTTGCTTTTACAGCAGTTGCAAG
Seq C2 exon
GTAACCTCCGAGGCTATGGCATGGCATCCCCAGGCCTCGCAGCCCCCAGCCTCACACCCCCACAACTGGCCACTCCAAATTTGCAACAGTTCTTTCCCCAGGCCACTCGCCAGTCCTTGCTGGGACCTCCTCCTGTTGGGGTCCCCATGAACCCTTCCCAGTTCAACCTTTCAGGACGGAACCCCCAGAAACAGGCCCGGACCTCCTCCTCTACCACCCCCAATCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337_MULTIEX2-2/5=1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=0.569 C2=0.994
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTACTGCAGCTCCAGCA
R:
GGGTTCCGTCCTGAAAGGTTG
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)