RnoEX0021396 @ rn6
Exon Skipping
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11392791-11394730:+
Coord C1 exon
chr3:11392791-11392936
Coord A exon
chr3:11393132-11393247
Coord C2 exon
chr3:11394659-11394730
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACCCTCCTCCCATCACACAGGGG
3' ss Score
8.02
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATGTTTAACCAGCAACTCCAGCAGCAGCAACAGTTGCAGCAGCTCCAGCAACAGCAGCTCCAGCAGCAGCAACAGCAGATACTCCAGCTCCAACAGCTACTGCAGCAGTCCCCACCACAGGCCTCCTTGTCCATGCCTGTCAGCCG
Seq A exon
GGGCCTCCCCCAGCAGTCATCCCCGCAACAGCTTCTGAATCTCCAGGGCCTCAACTCGACCTCCCTGCTCAATGGCTCCATGCTGCAAAGAGCTTTGCTCCTACAGCAGTTGCAAG
Seq C2 exon
GACTGGACCAGTTTGCAATGCCACCAGCCACGTATGACAGTGCCAGCCTCACCATGCCTACGGCAGCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.375 C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACCAGCAACTCCAGCAGC
R:
CGTAGGCATGGTGAGGCTG
Band lengths:
204-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]