HsaEX0015443 @ hg38
Exon Skipping
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128187863-128190862:-
Coord C1 exon
chr9:128190688-128190862
Coord A exon
chr9:128190329-128190444
Coord C2 exon
chr9:128187863-128187934
Length
116 bp
Sequences
Splice sites
3' ss Seq
CACCCCCTCCCAACACACAGGGG
3' ss Score
6.24
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CCACCATGTTCAGCCAGCAGCAGCAGCAGCAGCTCCAGCAACAGCAGCAGCAGCTCCAGCAGTTACAGCAGCAGCAGCTCCAGCAGCAGCAATTGCAGCAGCAGCAGTTACTGCAGCTCCAGCAGCTGCTCCAGCAGTCCCCACCACAGGCCCCGTTGCCCATGGCTGTCAGCCG
Seq A exon
GGGGCTCCCCCCGCAGCAGCCACAGCAGCCGCTTCTGAATCTCCAGGGCACCAACTCAGCCTCCCTCCTCAACGGCTCCATGCTGCAGAGAGCTTTGCTTTTACAGCAGTTGCAAG
Seq C2 exon
GACTGGACCAGTTTGCAATGCCACCAGCCACGTATGACACTGCCGGTCTCACCATGCCCACAGCAACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-'21-52,'21-47,23-52
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.509 C2=0.784
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATGTTCAGCCAGCAG
R:
GCTGTGGGCATGGTGAGAC
Band lengths:
239-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development