DreEX6008884 @ danRer10
Exon Skipping
Gene
ENSDARG00000089781 | ciz1a
Description
cdkn1a interacting zinc finger protein 1a [Source:ZFIN;Acc:ZDB-GENE-100922-222]
Coordinates
chr5:1214080-1217048:-
Coord C1 exon
chr5:1216861-1217048
Coord A exon
chr5:1215999-1216123
Coord C2 exon
chr5:1214080-1214247
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTGTGGTGTTGTTGATCAGGCC
3' ss Score
5.89
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
Exon sequences
Seq C1 exon
GTTTGGTGAATGGTCAGGATGTTCAACCCTCATCAGCACCAGCAGCAGCAGCAGCATCAGTTTCATCAGCACCTCCGTCAGCTCCAGCAGCTCTTTCAGCAGCAGACGCCTCCGCCTCCGCCTCCACCTCCTCCTCCACCACAGCCTCCACCTGCACACCACATCACACACCACCACCAGGCCGCACG
Seq A exon
GCCGATGGCAGTTCCTGCTCCAGCTCCTCCTCCAGCCCGCATGGTGAACCTCTGCTCCGCCACGCAGACCATCATCGCTCCCAATCCCATGCTGCAGGGGGCGCTGCTGATGCAACAGATGCAGG
Seq C2 exon
GCAGCATGCGTGGCTTCGCTATGGGAGGTCAGCAGTTTCCTCCGTTCTTCGCTGCTGGGTCTCGAGCGTCTCTTCTGGGTCCTGTTCCAATGGGAGTCGCCATCAAAACACCACACATGGGGTTCCCTCGACATTTCACACCGCACGCTCGCTATTTCCCCAATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089781-'2-3,'2-2,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.336 C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTCATCAGCACCTCCGT
R:
TGTGTGGTGTTTTGATGGCGA
Band lengths:
248-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]