GgaEX1035262 @ galGal3
Exon Skipping
Gene
ENSGALG00000002478 | Q8UWC5_CHICK
Description
NA
Coordinates
chr13:2213734-2215264:-
Coord C1 exon
chr13:2215223-2215264
Coord A exon
chr13:2214804-2214907
Coord C2 exon
chr13:2213734-2213786
Length
104 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTCCTTTTTCTAGGGG
3' ss Score
11.63
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATATCCAGAATGGAACCCTGACAGTGATTCAGGACATGGAAT
Seq A exon
GGGTGATCCCTTTATGTTGCAGCAGTCCACAAACCCTGCACCAGGAATTCTGGGACCCCCACCACCTCCATTCCACCTGGGAGGGCCTCCTGTTGGGCCAAGAG
Seq C2 exon
GAGCTGGAAATGGCAACATGCAAGGACCGAGACACATGCAGAAGGGCAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002478-'12-7,'12-6,13-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAATGGAACCCTGACAGT
R:
CTCTGCCCTTCTGCATGTGTC
Band lengths:
90-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]