HsaEX6100136 @ hg19
Exon Skipping
Gene
ENSG00000015479 | MATR3
Description
matrin 3 [Source:HGNC Symbol;Acc:6912]
Coordinates
chr5:138651386-138652794:+
Coord C1 exon
chr5:138651386-138651427
Coord A exon
chr5:138651765-138651877
Coord C2 exon
chr5:138652742-138652794
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTATGTCTTCACTTTACTAGGGG
3' ss Score
7.46
5' ss Seq
TGGGTAATT
5' ss Score
6.19
Exon sequences
Seq C1 exon
CTACCCAGAATGGAATCCTGACAATGATACAGGACACACAAT
Seq A exon
GGGTGATCCATTCATGTTGCAGCAGTCTACAAATCCAGCACCAGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGGGACCAGCAGTTGGACCAAGAGGAAATCTGG
Seq C2 exon
GTGCTGGAAATGGAAACCTGCAAGGACCTAGACACATGCAGAAAGGCAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000015479-'41-43,'41-42,44-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=0.970 C2=0.997
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGAATGGAATCCTGACA
R:
ACTCTGCCTTTCTGCATGTGT
Band lengths:
92-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)