DreEX6057954 @ danRer10
Exon Skipping
Gene
ENSDARG00000000394 | matr3l1.1
Description
matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
Coordinates
chr14:24795878-24796657:-
Coord C1 exon
chr14:24796619-24796657
Coord A exon
chr14:24796428-24796528
Coord C2 exon
chr14:24795878-24795936
Length
101 bp
Sequences
Splice sites
3' ss Seq
TAAAAATGATTTCTTCTTAGGTC
3' ss Score
7.5
5' ss Seq
GGGGTAAAA
5' ss Score
2.56
Exon sequences
Seq C1 exon
GTACCCCGACTGGGATCCTCAAATGCCTTCTAGCCGCAT
Seq A exon
GTCATCATCACTTTCCTTGGACACAAAGAGTCGTTCAGATGGATTGCTGGGCGCTGCTCCTATCGGTAGTCTACAGAGAACAGGGATGAGCTCCAGCTGGG
Seq C2 exon
GGCCTGATGCCAGTATGGGAATGACAAGAAAACAAACTTCATATTCTTCAGCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000394-'8-6,'8-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.343 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTGGGATCCTCAAATGCC
R:
TGGGTGCTGAAGAATATGAAGT
Band lengths:
90-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]