GgaEX1035262 @ galGal4
Exon Skipping
Gene
ENSGALG00000002478 | MATR3
Description
matrin-3 [Source:RefSeq peptide;Acc:NP_989478]
Coordinates
chr13:1835379-1836909:-
Coord C1 exon
chr13:1836868-1836909
Coord A exon
chr13:1836449-1836552
Coord C2 exon
chr13:1835379-1835431
Length
104 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTCCTTTTTCTAGGGG
3' ss Score
11.63
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATATCCAGAATGGAACCCTGACAGTGATTCAGGACATGGAAT
Seq A exon
GGGTGATCCCTTTATGTTGCAGCAGTCCACAAACCCTGCACCAGGAATTCTGGGACCCCCACCACCTCCATTCCACCTGGGAGGGCCTCCTGTTGGGCCAAGAG
Seq C2 exon
GAGCTGGAAATGGCAACATGCAAGGACCGAGACACATGCAGAAGGGCAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002478-'29-9,'29-7,30-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAATGGAACCCTGACAGT
R:
CTCTGCCCTTCTGCATGTGTC
Band lengths:
90-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]