MmuEX0015955 @ mm9
Exon Skipping
Gene
ENSMUSG00000027012 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:MGI Symbol;Acc:MGI:107750]
Coordinates
chr2:71057358-71066747:+
Coord C1 exon
chr2:71057358-71057475
Coord A exon
chr2:71065884-71065901
Coord C2 exon
chr2:71066657-71066747
Length
18 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGTCTGTACGTTCAGTTT
3' ss Score
6.1
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACTGATCAGAAGAAGGAAGCTGCTGTTTCTGTACAAGAAGAGTCTGATCTTGAAAAAAAAAGAAGAGAAGCTGAGGCATTGCTTCAAAGCATGGGACTAACTACGGACTCCCCTATTG
Seq A exon
TTTTTTCTGAGTACTGGG
Seq C2 exon
TCCCTCCTCCTATGTCTCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCCAGGATTCTGGAGATGGCGCCGTGGGATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027012-'3-8,'3-7,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF111503=DUF2927=FE(49.4=100)
A:
NO
C2:
PF111503=DUF2927=PD(6.3=16.1),PF115403=Dynein_IC2=PU(0.1=0.0)
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGGCATTGCTTCAAAGC
R:
CTGGCTTCCAGCTTCACTTGG
Band lengths:
111-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: