RnoEX0030336 @ rn6
Exon Skipping
Gene
ENSRNOG00000009781 | Dync1i2
Description
dynein cytoplasmic 1 intermediate chain 2 [Source:RGD Symbol;Acc:620174]
Coordinates
chr3:57823003-57832779:+
Coord C1 exon
chr3:57823003-57823120
Coord A exon
chr3:57831885-57831902
Coord C2 exon
chr3:57832689-57832779
Length
18 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGTCTGTACGTTCAGTTT
3' ss Score
6.1
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACTGATCAGAAGAAGGAAGCTGCAGTCTCTGTGCAGGAAGAGTCTGACCTTGAAAAGAAGAGAAGAGAAGCCGAAGCCTTGCTTCAGAGCATGGGGCTAACTACAGACTCCCCAATTG
Seq A exon
TTTTTTCTGAGCACTGGG
Seq C2 exon
TCCCTCCTCCCATGTCTCCATCCTCCAAGTCGGTGAGCACGCCAAGTGAAGCTGGAAGCCAGGACTCTGGAGATGGCGCCGTGGGATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009781_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGAGAAGCCGAAGCCT
R:
CTTCCAGCTTCACTTGGCGTG
Band lengths:
118-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]