BtaEX0012221 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002646 | DYNC1I2
Description
cytoplasmic dynein 1 intermediate chain 2 [Source:RefSeq peptide;Acc:NP_001069351]
Coordinates
chr2:24846824-24857203:-
Coord C1 exon
chr2:24857086-24857203
Coord A exon
chr2:24847550-24847567
Coord C2 exon
chr2:24846824-24846914
Length
18 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTCTGTACACTTCAGTTT
3' ss Score
5.94
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACTGATCAGAAGAAGGAAGCAGTTGCTCCTGTGCAAGAAGAATCAGATCTTGAAAAAAAAAGAAGAGAAGCTGAAGCATTGCTTCAAAGCATGGGTCTAACTGCAGAATCCCCCATTG
Seq A exon
TTTTTTCTGAATACTGGG
Seq C2 exon
TCCCTCCTCCTATGTCTCCATCCTCCAAATCTGTGAGCACACCAAGCGAAGCTGGGAGCCAGGACTCTGGAGATGGCGCCGTGGGATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002646_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
ENSBTAT00000003429fB2307
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGAAGCTGAAGCATTGCT
R:
CGCTTGGTGTGCTCACAGATT
Band lengths:
106-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development