MmuEX0044723 @ mm9
Exon Skipping
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29869196-29871240:+
Coord C1 exon
chr2:29869196-29869358
Coord A exon
chr2:29869678-29869692
Coord C2 exon
chr2:29871109-29871240
Length
15 bp
Sequences
Splice sites
3' ss Seq
CTTTCCATCTGTTTTTGTAGCTT
3' ss Score
9.19
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGGCGCCGCCTAAAAGCCCAGATGATTGAAAAAAGGTCAAAACTTGGAGAATCTCAAACACTTCAGCAGTTCAGCCGGGATGTGGATGAGATTGAAGCCTGGATCAGTGAGAAGTTACAGACAGCCAGTGATGAGTCATACAAGGACCCCACCAACATCCAG
Seq A exon
CTTTCCAAGCTGTTG
Seq C2 exon
AGCAAGCACCAGAAGCACCAAGCCTTTGAGGCAGAACTGCACGCCAATGCTGACCGAATCCGTGGAGTTATCGACATGGGCAACTCCCTCATTGAGCGTGGGGCCTGTGCTGGCAGTGAGGATGCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(16.2=30.9),PF0043516=Spectrin=PU(33.0=63.6)
A:
PF0043516=Spectrin=FE(3.6=100)
C2:
PF0043516=Spectrin=FE(40.6=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGGATGTGGATGAGATTG
R:
TCAAAGGCTTGGTGCTTCTGG
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: