DreEX0074854 @ danRer10
Exon Skipping
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13093452-13096760:+
Coord C1 exon
chr21:13093452-13093619
Coord A exon
chr21:13093851-13093865
Coord C2 exon
chr21:13096619-13096760
Length
15 bp
Sequences
Splice sites
3' ss Seq
CCCCCGTTGTTTGTTTCTAGCTG
3' ss Score
9.86
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGGCTCCGCCTCAAGGCTCAGATGATTGAGAAACGCTCCAAGCTTGGCGAGTCACAGACTCTACAGCAGTTCAGCAGAGACGTTGACGAGATCGAAGCTTGGATCAGTGAGAAACTCCAGACCGCCACAGACGAGTCTTACAAAGACCCCACCAACATCCAGGTAAC
Seq A exon
CTGTCCAAGCTGCTG
Seq C2 exon
CCACTTTCAGAGCAAACACCAGAAACACCAGGCTTTTGAGGCTGAGCTACACGCTAACGCTGATCGTATCCGCGGAGTGATTGACACGGGCAATGCTCTCATCCAGAGAGGTGCCTGTGCTGGAAGTGAAGATGCTGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(16.2=30.9),PF0043516=Spectrin=PU(31.5=63.6)
A:
PF0043516=Spectrin=FE(3.6=100)
C2:
PF0043516=Spectrin=FE(42.3=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCACCAACATCCAGGTAA
R:
ATTGCCCGTGTCAATCACTCC
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]