RnoEX0085728 @ rn6
Exon Skipping
Gene
ENSRNOG00000015396 | Sptan1
Description
spectrin, alpha, non-erythrocytic 1 [Source:RGD Symbol;Acc:621714]
Coordinates
chr3:8582331-8584357:+
Coord C1 exon
chr3:8582331-8582493
Coord A exon
chr3:8582820-8582834
Coord C2 exon
chr3:8584226-8584357
Length
15 bp
Sequences
Splice sites
3' ss Seq
CTTTCCATCTGTCTTTGTAGCTT
3' ss Score
10.24
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGGCGCCGCCTAAAAGCCCAGATGATTGAGAAAAGGTCAAAGCTCGGAGAATCTCAAACACTTCAGCAGTTCAGCCGGGATGTAGATGAGATTGAAGCCTGGATCAGTGAGAAGTTACAAACAGCCAGCGATGAGTCATACAAGGACCCCACCAACATCCAG
Seq A exon
CTTTCCAAGCTGCTG
Seq C2 exon
AGCAAGCACCAGAAGCACCAAGCCTTTGAGGCAGAACTGCACGCCAATGCTGACCGAATCCGTGGAGTTATTGACATGGGCAACTCCCTCATTGAGCGTGGGGCCTGTGCTGGCAGTGAGGATGCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015396-'63-67,'63-66,64-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.000 C2=0.142
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(16.2=30.9),PF0043516=Spectrin=PU(33.0=63.6)
A:
PF0043516=Spectrin=FE(3.6=100)
C2:
PF0043516=Spectrin=FE(40.6=100)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACAGCCAGCGATGAGTCA
R:
CACGGATTCGGTCAGCATTGG
Band lengths:
109-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]