GgaEX0006463 @ galGal4
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5170648-5173163:+
Coord C1 exon
chr17:5170648-5170810
Coord A exon
chr17:5171260-5171274
Coord C2 exon
chr17:5173032-5173163
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCTCTCAATCTGTTTTATAGCTT
3' ss Score
7.92
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGGCGTCGTCTGAAGGCTCAGATGATTGAGAAGAGATCTAAGCTGGGAGAATCTCAGACCCTCCAACAGTTCAGTCGTGATGTTGATGAAATAGAAGCTTGGATCAGTGAAAAGCTTCAAACTGCAAGTGATGAGTCATATAAGGATCCCACAAACATCCAG
Seq A exon
CTTTCCAAACTGCTG
Seq C2 exon
AGCAAGCACCAGAAGCACCAAGCCTTTGAAGCTGAGCTCCACGCCAACGCAGATCGGATTCGTGGAGTCATTGAAATGGGGAACTCTCTTATTGAAAGAGGAGCGTGTGCTGGCAGCGAGGATGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719-'56-60,'56-58,57-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(16.2=30.9),PF0043516=Spectrin=PU(31.5=63.6)
A:
PF0043516=Spectrin=FE(3.6=100)
C2:
PF0043516=Spectrin=FE(38.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGGATCAGTGAAAAGCTTCA
R:
GGAGCTCAGCTTCAAAGGCTT
Band lengths:
107-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]