GgaEX0006463 @ galGal3
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
NA
Coordinates
chr17:5797460-5799975:+
Coord C1 exon
chr17:5797460-5797622
Coord A exon
chr17:5798072-5798086
Coord C2 exon
chr17:5799844-5799975
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCTCTCAATCTGTTTTATAGCTT
3' ss Score
7.92
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGGCGTCGTCTGAAGGCTCAGATGATTGAGAAGAGATCTAAGCTGGGAGAATCTCAGACCCTCCAACAGTTCAGTCGTGATGTTGATGAAATAGAAGCTTGGATCAGTGAAAAGCTTCAAACTGCAAGTGATGAGTCATATAAGGATCCCACAAACATCCAG
Seq A exon
CTTTCCAAACTGCTG
Seq C2 exon
AGCAAGCACCAGAAGCACCAAGCCTTTGAAGCTGAGCTCCACGCCAACGCAGATCGGATTCGTGGAGTCATTGAAATGGGGAACTCTCTTATTGAAAGAGGAGCGTGTGCTGGCAGCGAGGATGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719-MICROEX1-1/2
Average complexity
MIC_M
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.000 C2=0.123
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(16.2=30.9),PF0043516=Spectrin=PU(31.5=63.6)
A:
PF0043516=Spectrin=FE(3.6=100)
C2:
PF0043516=Spectrin=FE(38.7=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGGATCAGTGAAAAGCTTCA
R:
GGAGCTCAGCTTCAAAGGCTT
Band lengths:
107-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]