BtaEX0034473 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99161370-99163678:+
Coord C1 exon
chr11:99161370-99161532
Coord A exon
chr11:99161928-99161942
Coord C2 exon
chr11:99163547-99163678
Length
15 bp
Sequences
Splice sites
3' ss Seq
ATTTTAATCTGTTTTTGTAGCTT
3' ss Score
7.77
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGGCGCCGTCTAAAAGCTCAGATGATTGAGAAGAGGTCAAAGCTGGGAGAATCACAGACCCTCCAGCAGTTCAGCCGGGATGTAGACGAGATTGAAGCTTGGATCAGTGAAAAATTACAGACTGCAAGTGATGAGTCATATAAGGACCCCACCAACATCCAG
Seq A exon
CTTTCCAAGCTGCTG
Seq C2 exon
AGCAAGCATCAGAAGCACCAGGCCTTCGAGGCAGAACTGCACGCCAATGCGGACCGGATCCGTGGGGTCATCGACATGGGCAACTCCCTCATTGACCGCGGGGCCTGCGCCGGCAGCGAGGATGCCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(16.2=30.9),PF0043516=Spectrin=PU(33.0=63.6)
A:
PF0043516=Spectrin=FE(3.6=100)
C2:
PF0043516=Spectrin=FE(40.6=100)
Main Inclusion Isoform:
ENSBTAT00000020395fB6718
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGGGATGTAGACGAGATT
R:
CTGGTGCTTCTGATGCTTGCT
Band lengths:
111-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development