MmuEX0018465 @ mm9
Exon Skipping
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30238486-30241041:+
Coord C1 exon
chr2:30238486-30238539
Coord A exon
chr2:30239110-30239226
Coord C2 exon
chr2:30239449-30241041
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGCCCTGCCACTCACCACAGGTG
3' ss Score
7.88
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GCCCTAGCCACCGCGTGCTGGTCTGTCCTGAAAGCCAAGAGGAGGCTCCTGATG
Seq A exon
GTGCCTGATGGCTTCATCTCCCATTTCTACTCCGTATCGGAGCATGTTAGCCCTGTGTTGGCCTTTGGCTTCCTCGGACCCAAGCCCCAGCTCTCGGAAGTCTGTGCTTTCTTCAAG
Seq C2 exon
CACCAGATTGTACAATACCTGAGGGACATGTTCGACCTGGACAACGTGCGCTACACATCTGTGCCAGCCCTAGCAGAAGACATCCTACAGCTGTCCCGGCGGCGCAGCGAGATTCTATTGGGCTACCTGGGGGCACCTGTGGCTAGTAGCATCGGGCTGAATGGGCCACTGCCTCGAGAAAATGGGCCCCTGGAAGAGCTGCAGTAACAGGGGATGGGCTGGAGGGGAGAGGTGGCTGTTTGGGCCTCAGATACAAGGTGATAGGAGAGAGAAAGCTGCCACTCCCTTCCTTTGGGTTGGTATCCAAGGGCCATGGTGGCCAAGGGCCATTGCCCCTAAGCTTGCTCCACTTCCTCACCTGGGAATTCCCAACACCCAGGGGACAAATTTCCATGGAGAGGAACCACTAGAAGCACTGATAGCAGCTGCCCTTGGGGTTCCCTGAGCAGCAGAGGCAGGCCAGAGTCAGCAGGGACTGGCCAGGGGCAGGTAGCAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(23.3=100),PF102654=DUF2217=PU(2.2=5.6)
A:
PF102654=DUF2217=FE(7.1=100)
C2:
PF102654=DUF2217=PD(1.4=1.7),PF102654=DUF2217=PD(93.3=72.4)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTGGTCTGTCCTGAAAG
R:
ATCCCCTGTTACTGCAGCTCT
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: