HsaEX0024631 @ hg19
Exon Skipping
Gene
ENSG00000148343 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:23621]
Coordinates
chr9:131831355-131834361:+
Coord C1 exon
chr9:131831355-131831408
Coord A exon
chr9:131832128-131832244
Coord C2 exon
chr9:131832526-131834361
Length
117 bp
Sequences
Splice sites
3' ss Seq
CAGCCTTGTGCCCACCGCAGGTG
3' ss Score
7.53
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GCCTTGGCCACTGCTTGCTGGTCGGTCCTGAAAGCCAAGAGGAGGCTGCTGATG
Seq A exon
GTGCCTGATGGCTTCATCTCCCATTTCTACTCCGTATCGGAGCATGTGAGCCCTGTCCTAGCCTTCGGCTTCCTTGGACCCAAGCCTCAGCTTGCTGAAGTCTGTGCTTTCTTCAAG
Seq C2 exon
CACCAGATTGTGCAGTACCTGAGGGACATGTTCGACCTGGACAATGTGCGCTACACGTCACTGCCCGCGCTGGCAGACGACATCCTGCAGCTGTCCCGGCGCCGCAGCGAGATATTGCTGGGGTACCTGGGGGTGCCCGCGGCCAGCAGCGCAGGCGTGAATGGGGCGCTGCCCCGAGAGAATGGGCCCCTGGGGGAGCTGCAGTAGAGGCGGCACGGGCTGGGGGGTGGCAGAGAGAAGGCTCCTCCTCCCTTCCCTGGGTTGGTATCTGACAGCTGTGGTGGCTGAGGGCCGTTGCCCCTGACTTTGCCCCACCCCCATCATCTGGGAGTCCCCAAGGCCCAGAGGGGACATTTCCATGGAGAAGAACGGTTCCTGGGGGAAGCAGAGGCCAGGACCAGTGGGGCCTGTGGGAGAGAAAGGCTGTGAGAGAGGGGGTTGTTGTGGAGAATTGGGACAGGCAGAGCCAGGATGCCCCAGGTGGGGGACCCCAAAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148343_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.2=100)
A:
PF102654=DUF2217=FE(7.1=100)
C2:
PF102654=DUF2217=PD(7.8=60.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGTCCTGAAAGCCAAGAG
R:
CTCTACTGCAGCTCCCCCAG
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)