RnoEX0054553 @ rn6
Exon Skipping
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8948629-8951189:+
Coord C1 exon
chr3:8948629-8948682
Coord A exon
chr3:8949211-8949327
Coord C2 exon
chr3:8949543-8951189
Length
117 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTGCCCTCCCCACAGGTG
3' ss Score
11.08
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GCCCTGGCCACCGCGTGCTGGTCTGTCCTGAAAGCCAAGAGGAGGCTTCTGATG
Seq A exon
GTGCCTGATGGCTTCATCTCTCATTTCTACTCCGTATCGGAGCATGTTAGCCCTGTGCTGGCCTTTGGCTTCCTCGGACCCAAGCCCCAGCTCTCAGAAGTCTGTGCTTTCTTCAAG
Seq C2 exon
CACCAGATTGTGCAATACCTGAGGGACATGTTCGACCTGGACAACGTGCGCTACACTTCTGTGCCAGCCCTAGCAGAAGACATCCTACAGTTGTCCCGGCGCCGCAGCGAGATTCTGTTGGGCTACCTGGGGGCACCAGTGGCTAGTAGCACCGGGCTGAATGGGCCACTGCCTCGAGAGAATGGGCCCCTGGATGAGCTGCAATAGTAGGGTGCGGGCTGGAGGAGAGAGGTGGCTGGGCCTCAGTCACAAGGGTGATTGCTGGGAGAGAGAAAGCTGCCCCTCCCTTCCTTTGGAGTGGCATCCAAGGGCCAGGGTGGCCAAGGGCCATTGCCCCTGAGCTTGCTCCACTTCCTCATCTGGGAATCCCAACACCCAGAGGACAGATTTCCATGAAGAGGAACCACTAGGAGCACTGGATAGCAGCTGCCCTTGGGGTTCCCTGAGCAGTAGAGGCAGGCCAGAGTCAGCAGCAGGGTCTGACCAAGGGCAAGCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.221
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.7=100),PF102654=DUF2217=PU(0.1=0.0)
A:
PF102654=DUF2217=FE(7.1=100)
C2:
PF102654=DUF2217=PD(0.2=1.4),PF102654=DUF2217=PD(95.5=60.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTGGTCTGTCCTGAAAG
R:
CGCACCCTACTATTGCAGCTC
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]