DreEX6082810 @ danRer10
Exon Skipping
Gene
ENSDARG00000089357 | fam73b
Description
family with sequence similarity 73, member B [Source:ZFIN;Acc:ZDB-GENE-050320-135]
Coordinates
chr21:3713696-3718224:+
Coord C1 exon
chr21:3713696-3713749
Coord A exon
chr21:3714355-3714471
Coord C2 exon
chr21:3717690-3718224
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTCTTGCTGCTCAGGTT
3' ss Score
8.18
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCATTGGCTACAGCCTGTTGGTCTGTGCTGAAAGCTAAAAGAAGATTACTAATG
Seq A exon
GTTCCAGATGGTTTCATCGCACATTTCTATGTAATCTCTGAACATGTGAGTCCGGTTTTGGCCTTTGGGTTTTTGGGCCCGCATCAGCATCTCAGTGAGGTGTGCACCATATTCAAG
Seq C2 exon
CAACAGATTGTTCAGTATCTGAAGGACATGTTTGACCATGATAAGGTGCGTTTCACATCCGTCCCATCTCTGGCTGAAGACATCCTCCGCCTGTCCCACAGACGAGCAGATATCCTGATGGGTTACCTAGGCATCGAAAATCTACCTGAGACCAATGGAGCTTTACCCAAGAGCCCCTGCCAAGCGGAAAGCGGGAATCTGGACGCCAGCGGACAGCAAGACTGAGCTTTAAGGTTGTTCTTCATTTAGCTCTTTATCATCAGACCAATCAAAAGCGTTCGCAGATTTACATTCGAGACCTTAGTTTTGTAGAATATACTGAGAGATCAACCACTACTGAGGTCAACCGAGGCCTTTTCTTCAGCTCTTTCTGCAAACTTTCCACCAAAATATCAAACGTTTTGTCACCGTAATCCAGCGCTGCTATTTATCCACCTTAATTTTATCAGGAAGACTCCATCATAACCCAAATGAACTGAATAAAACTCATCTTTTAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089357-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.284
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.7=100)
A:
PF102654=DUF2217=FE(8.3=100)
C2:
PF102654=DUF2217=PD(9.2=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGCCTGTTGGTCTGTGC
R:
AGATTCCCGCTTTCCGCTTG
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]