MmuEX0020200 @ mm9
Exon Skipping
Gene
ENSMUSG00000000394 | Gcg
Description
glucagon [Source:MGI Symbol;Acc:MGI:95674]
Coordinates
chr2:62318522-62321707:-
Coord C1 exon
chr2:62321623-62321707
Coord A exon
chr2:62320374-62320416
Coord C2 exon
chr2:62318522-62318625
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTACTTTTTTTCAGAAA
3' ss Score
10.46
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AGGGCAGAGCTTGGGCCCAGGACACACTCAAAGTTCCCAAGGGGACTCCCTCTGTCTACACCTGTTCGCAGCTCAGGCTCACAAG
Seq A exon
AAATACCATTCTCTTTCTTTACACTAGCCAAAAGAGGAGAGAA
Seq C2 exon
GCAGAAAAAAAAATGAAGACCATTTACTTTGTGGCTGGATTGCTTATAATGCTGGTGCAAGGCAGCTGGCAGCACGCCCTTCAAGACACAGAGGAGAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000394_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.290
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACCTGTTCGCAGCTCAG
R:
CTGGGGTTCTCCTCTGTGTCT
Band lengths:
134-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: