MmuEX0038668 @ mm9
Exon Skipping
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33115998-33140428:-
Coord C1 exon
chr2:33140345-33140428
Coord A exon
chr2:33131666-33131755
Coord C2 exon
chr2:33115998-33116124
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTTTAACTCTACAGGTC
3' ss Score
10.22
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAGTTGGCCAGTTGTGGATGGAGTAAAAAGGAGAAACACAGTCTTGCCCCCAACGTCGTGGCCTTTACCCGGAGGTTCAACCAG
Seq A exon
GTCAGTTTTTGGGTCGTACGAGAAATTCTAACAGCACAGACTTTAAAAATAAGGGCAGAAATCCTGAGCCATTTTGTGAAAATAGCCAAG
Seq C2 exon
CTTTTGAATCGAAAAGACAAGACTACTTTTGAGAAACTTGACTACCTGATGTCCAAAGAAGACAACTACAAGCGAACCCGGGACTACATCCGAAGTCTGAAGATGGTGCCCAGCATTCCCTATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831_MULTIEX2-5/7=4-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.002
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(14.5=100)
A:
PF0061714=RasGEF=FE(15.6=100)
C2:
PF0061714=RasGEF=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGAAACACAGTCTTGCCC
R:
GGCACCATCTTCAGACTTCGG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: