GgaEX0027572 @ galGal3
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11025572-11028132:+
Coord C1 exon
chr17:11025572-11025655
Coord A exon
chr17:11026083-11026172
Coord C2 exon
chr17:11028006-11028132
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGTATGTGTTTACTTTATAGGTC
3' ss Score
9.89
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAACTAGCCAGCTGTGGGTGGAATAAGAAAGAAAAGCATATCCTTGCTCCAAATATTGTTGCCTTCACTAGGAGGTTTAACCAG
Seq A exon
GTCAGTTTTTGGGTTGTACGAGAAATATTAACAGCACAGACGTTAAAAATAAGGGCAGAAATACTGAGCCATTTTGTGAAAACTGCTAAA
Seq C2 exon
CTCTTGAATCGCAAAGACAAGGCCACTTTTGAGAAGTTAGACTACTTACTTTCTAAAGAGGACAATTATAAAAGAACACGAGAGTACATCAGAAGCTTAAAAATGGTTCCAAGTATTCCATATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.8=100)
A:
PF0061714=RasGEF=FE(14.9=100)
C2:
PF0061714=RasGEF=FE(21.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTGGGTGGAATAAGAA
R:
AGCTTCTGATGTACTCTCGTGT
Band lengths:
173-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]