DreEX0060661 @ danRer10
Exon Skipping
Gene
ENSDARG00000068370 | ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-070720-16]
Coordinates
chr8:33065493-33075348:-
Coord C1 exon
chr8:33075265-33075348
Coord A exon
chr8:33072898-33072987
Coord C2 exon
chr8:33065493-33065585
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGACCTTTTTCTTCTCATAGGTC
3' ss Score
11.39
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGTTGGCGAGCTGTGGATGGAACAAGAAGGAGAAGCACAGCCTGTCACCCAATGTTGTGGCCTTTACAAGGAGGTTCAACCAG
Seq A exon
GTCAGTTTCTGGGCAGTGAGGGAGATATTGACAGCTCAGACCCTGAAAATACGAGCTGAGATATTGGGCCACTTCATAAAAATTGCCAAG
Seq C2 exon
AAACTACTGGAGCTGAATAACCTGCACTCCTTGGTGTCAGTGGTCTCAGCCCTTCAGAGTGCTCCCATCTTCAGACTCAGCAAAACCTGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068370-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.6=100)
A:
PF0061714=RasGEF=FE(14.6=100)
C2:
PF0061714=RasGEF=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGCGAGCTGTGGATG
R:
GCCCAGGTTTTGCTGAGTCTG
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]