RnoEX0073784 @ rn6
Exon Skipping
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12306722-12330607:-
Coord C1 exon
chr3:12330524-12330607
Coord A exon
chr3:12322034-12322123
Coord C2 exon
chr3:12306722-12306848
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCTATCTTTAACTCTACAGGTC
3' ss Score
9.25
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAATTGGCCAGCTGCGGATGGAGTAAAAAGGAGAAACACAGTCTTGCCCCCAATGTCGTGGCCTTTACTCGGAGGTTCAACCAG
Seq A exon
GTCAGTTTTTGGGTCGTACGAGAAATTCTAACAGCACAGACTTTAAAAATAAGGGCAGAAATCCTGAGCCATTTTGTGAAAATAGCCAAG
Seq C2 exon
CTTTTAAATCGCAAAGACAAGACCACTTTCGAGAAACTGGACTACCTGATGTCAAAAGAAGACAACTACAAGCGAACTCGGGACTACATCCGAAGTCTGAAGATGGTGCCCAGCATTCCTTATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910_MULTIEX3-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.221 C2=0.250
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.8=100)
A:
PF0061714=RasGEF=FE(14.9=100)
C2:
PF0061714=RasGEF=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGAAACACAGTCTTGCCC
R:
GGCACCATCTTCAGACTTCGG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]