HsaEX0052096 @ hg19
Exon Skipping
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:16851]
Coordinates
chr9:129796710-129815218:+
Coord C1 exon
chr9:129796710-129796793
Coord A exon
chr9:129812322-129812411
Coord C2 exon
chr9:129815126-129815218
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTGTGTATTTGACTCTACAGGTC
3' ss Score
9.58
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAACTAGCCAGCTGTGGATGGAGTAAGAAGGAGAAACACAGTCTTGCCCCTAACGTTGTGGCCTTTACCCGGAGGTTTAACCAG
Seq A exon
GTCAGTTTTTGGGTTGTACGAGAAATTCTAACAGCACAGACTTTAAAAATAAGGGCAGAAATCCTCAGCCATTTTGTGAAAATAGCCAAG
Seq C2 exon
AAACTTCTAGAACTCAACAACCTTCATTCTCTCATGTCTGTGGTATCAGCATTACAAAGTGCTCCCATCTTCAGGCTGACAAAAACCTGGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828_MULTIEX1-6/15=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(49.1=100),PF0061714=RasGEF=PU(0.1=0.0)
A:
PF0061714=RasGEF=FE(14.9=100)
C2:
PF0061714=RasGEF=PD(0.1=0.0),PF0061714=RasGEF=FE(40.5=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTGGATGGAGTAAGAAGG
R:
CCCAGGTTTTTGTCAGCCTGA
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)