BtaEX0029611 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97780157-97799426:+
Coord C1 exon
chr11:97780157-97780240
Coord A exon
chr11:97795663-97795752
Coord C2 exon
chr11:97799334-97799426
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGTTTGACTCTCCAGGTC
3' ss Score
10.26
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAACTAGCCAGCTGTGGATGGAGTAAGAAGGAGAAACATAGTCTCGCCCCCAACGTCGTGGCCTTTACCCGGAGGTTTAACCAG
Seq A exon
GTCAGTTTTTGGGTTGTACGAGAAATTCTAACAGCACAGACTTTAAAAATAAGGGCAGAAATCCTGAGCCATTTTGTGAAAATAGCCAAG
Seq C2 exon
AAACTTCTAGAACTCAACAACCTTCATTCTCTCATGTCTGTGGTGTCAGCATTGCAGAGCGCACCCATCTTCAGGCTGACGAAAACCTGGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.8=100)
A:
PF0061714=RasGEF=FE(14.9=100)
C2:
PF0061714=RasGEF=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTGGATGGAGTAAGAAGG
R:
CCCAGGTTTTCGTCAGCCTG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development