GgaEX0027572 @ galGal4
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr17:10296962-10298194:+
Coord C1 exon
chr17:10296962-10297045
Coord A exon
chr17:10297473-10297562
Coord C2 exon
chr17:10298102-10298194
Length
90 bp
Sequences
Splice sites
3' ss Seq
TGTATGTGTTTACTTTATAGGTC
3' ss Score
9.89
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAACTAGCCAGCTGTGGGTGGAATAAGAAAGAAAAGCATATCCTTGCTCCAAATATTGTTGCCTTCACTAGGAGGTTTAACCAG
Seq A exon
GTCAGTTTTTGGGTTGTACGAGAAATATTAACAGCACAGACGTTAAAAATAAGGGCAGAAATACTGAGCCATTTTGTGAAAACTGCTAAA
Seq C2 exon
AAGCTTCTAGAGCTGAATAACCTCCATTCTCTTATGTCTGTGGTGTCAGCACTGCAAAGTGCACCCATCTTCAGACTGACCAAAACCTGGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906-'4-9,'4-7,5-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.8=100)
A:
PF0061714=RasGEF=FE(14.9=100)
C2:
PF0061714=RasGEF=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTGGGTGGAATAAGAA
R:
GCCCAGGTTTTGGTCAGTCTG
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]