MmuINT0057742 @ mm9
Intron Retention
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:24937326-24937670:+
Coord C1 exon
chr2:24937326-24937467
Coord A exon
chr2:24937468-24937552
Coord C2 exon
chr2:24937553-24937670
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
TGGTTCCATATTATCCCTAGTTT
3' ss Score
5.31
Exon sequences
Seq C1 exon
CTCAGACCCTCTCACCATGGGACTCTCCTGGAAGGAACGGGTCTTCATGGCTCTGTTGGGAGTTGCAGCAGCCTCTGGCCTCACCATGCTCGTCCTCATCCTGGTGAAGGCAATCAATGTTCTCTTGCCTGCAGACACCAAG
Seq A exon
GTTTGCTCAGGGACCTAACGAGGATGTTGGGCTGGGTGACCAGGATGTTGGCCTCAACACCTTTCTGGTTCCATATTATCCCTAG
Seq C2 exon
TTTGGGATTGTGTTTGATGCCGGCTCCTCCCACACATCCCTGTTTGTGTACCAGTGGCCAGCAAACAAGGAGAAGGACACAGGAGTGGTCAGCCAGGCCCTGACTTGCCAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813-Entpd8:NM_028093:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(2.5=19.0)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGGTCTTCATGGCTCTG
R:
CTTGTTTGCTGGCCACTGGTA
Band lengths:
177-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: