BtaINT0056549 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030246 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr11:105699292-105699746:+
Coord C1 exon
chr11:105699292-105699547
Coord A exon
chr11:105699548-105699628
Coord C2 exon
chr11:105699629-105699746
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
GACCCCGGTGTCACCCCCAGTTT
3' ss Score
6.86
Exon sequences
Seq C1 exon
CGCGGTCCTTGGCCCTGCCCGTCGACCAGCAGGAGTGGGCCGCCTGAGCCCCGGGGAGGACGAGGGGCGCTGCAGCCAGTGGAGTCGGGGTGCCCCCGCGGCCCCACGGGTGCCAGTCCTGCCCCCCAGCATGGGGCTGACCTGGAAGCAGCGGGTCTTCACGGCTCTGCTGGGCGCAGCAGCGGTCTCAGGCCTCACCGCGCTGCTTCTCGTCCTGGTGGGGACCATGAACGTCCTCCTGCCTCCAGACACCAAG
Seq A exon
GTGTGCCCCTGGGCCCTCCCGGAGAGGCTGGGCTGGGCCGCGCCTGCCCCCACGCCCTCCTGACCCCGGTGTCACCCCCAG
Seq C2 exon
TTTGGGATCGTGTTCGACGCTGGGTCCTCCCACACATCCCTCTTTGTGTATCAGTGGCCGGCCAACAAGGAGAACGACACCGGCATAGTCAGCCAGGCCCTGGCCTGCCAGGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030246:ENSBTAT00000016080:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.9=19.0)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCAGCGGGTCTTCAC
R:
CCGGCCACTGATACACAAAGA
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development